provSummarizeR - Summarizes Provenance Related to Inputs and Outputs of a Script or Console Commands

Reads the provenance collected by the 'rdtLite' or 'rdt' packages, or other tools providing compatible PROV JSON output, created by the execution of a script or a console session, and provides a human-readable summary identifying the input and output files, the scripts used (if any), errors and warnings produced, and the environment in which it was executed. It can also optionally package all the files into a zip file. The exact format of the PROV JSON file created by 'rdtLite' and 'rdt' is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>. More information about 'rdtLite' and associated tools is available at <https://github.com/End-to-end-provenance/> and Lerner, Boose, and Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi: 10.3390/informatics5010012>.

Last updated 2 years ago

4.18 score 7 scripts 278 downloads

provTraceR - Uses Provenance to Trace File Lineage for One or more R Scripts

Uses provenance collected by 'rdtLite' package or comparable tool to display information about input files, output files, and exchanged files for a single R script or a series of R scripts.

Last updated 4 years ago

3.70 score 4 scripts 123 downloads

rdtLite - Provenance Collector

Defines functions that can be used to collect provenance as an 'R' script executes or during a console session. The output is a text file in 'PROV-JSON' format.

Last updated 2 years ago

3.56 score 2 stars 36 scripts 286 downloads

provViz - Provenance Visualizer

Displays provenance graphically for provenance collected by the 'rdt' or 'rdtLite' packages, or other tools providing compatible PROV JSON output. The exact format of the JSON created by 'rdt' and 'rdtLite' is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>. More information about rdtLite and associated tools is available at <https://github.com/End-to-end-provenance/> and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi: 10.3390/informatics5010012>.

Last updated 2 years ago

3.48 score 1 packages 2 scripts 266 downloads

provExplainR - Compare Provenance Collections to Explain Changed Script Outputs

Inspects provenance collected by the 'rdt' or 'rdtLite' packages, or other tools providing compatible PROV JSON output created by the execution of a script, and find differences between two provenance collections. Factors under examination included the hardware and software used to execute the script, versions of attached libraries, use of global variables, modified inputs and outputs, and changes in main and sourced scripts. Based on detected changes, 'provExplainR' can be used to study how these factors affect the behavior of the script and generate a promising diagnosis of the causes of different script results. More information about 'rdtLite' and associated tools is available at <https://github.com/End-to-end-provenance/> and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi:10.3390/informatics5010012>.

Last updated 2 years ago

3.00 score 8 scripts 176 downloads